CPC编码能力预测

应用场景:CPC是一款预测基因编码能力的软件,基于序列比对的蛋白质编码潜能的计算工
具,通过转录本与已知蛋白数据库比对,根据转录本各个编码框的生物学序列特征评估其编码潜能

。输入代表核酸的fasta文件与相应的注释数据库进行注释,得到说明基因编码能力的结果文件。

e.g

>COnp41762_c1
AAAGAAAAACCATTTGTCATAATTGCCGGTGGAGCCAAAGTCTTTAGTACTTGAAGCAAATGGGAAGGACCCCTTGTTGC
GAGAAAGGCCACACAAACAAAGGAGCATGGGCTAGGGAAGAAGACGAGCGTTTAATAGCTTACATCCAAGCTCACGGAGA
GGGTTGTTGGAGATCGCTACCCAAAGCTGCCGGCCTTCTTCGTTGCGGCAAGAGTTGCCGTCTCCGGTGGATTAACTATC
TGAGACCTGATGTTAAGAGAGGTAACTTTACCGACGAGGAAGATGACCTCATCGTCAAGTTACATAGTCTTCTTGGTAAC
AAGTGGTCCAAGATAGCAGCGAGGCTACCGGGAAGAACAGATAATGAG
>COnp47930_co
WATWACUGSTCUCTUCTCCCATTGCAGCCACAACGGCCACAACTCCCGGACCTGCCCGAATCGTGGGGTCAAGCTGTTCG
GTGTTCGCTTGACTGACGGATTGATTCGGAAGAGCGCCAGTATGAGTAACTTATCCCAATTCTCCGGCTCCAATTCCGCC
TCGCCTGGTGAGGGTGCGGAACATGTCGACGGTTATGCTTCTGAGGATTTT
>comp33042_c1
AATCTGCAACTTTTCCCACATCTGTTTAAGCCTGCTTGCTTTGGAAGAGACCTCCAATTTGCATGGCCATTTCTGTTAAT
GTGATCTACCAATTTCTGATCCTCCTGCGGAGTCCAAGGCGCCTTTTTCACGTTGGCGTCGTCGGCGCAGCACGGAGACC
TACCCATTGCAGATGATCACAAAGCTTAATTAATCTCCTCTCGGTGATCAAGGGCTGCTG
=CORp47612_c0
AAGAACAGATAATGAGATAAAGAACTACTGGAACACACACATCAAAAGAAAGCTCATAAGCAGAGGGATCGATCCGCAAA

#transcrits_id
comp41762_c1
comp47930_co
comp33042_c1
comp47612_co
comp52356_c0
comp41536_c1
comp504952_co
comp5183_co
comp40193_c1

length feature score
368
211
220
610
1784
454
235
330
675

coding 3.22753
coding 1.21021
noncoding
coding 1.15221
coding 5.52802
coding 2.23669
noncoding
noncoding
coding 0.191831

-1.43223

-0.9897
-0.898741